Hang Chang

2016
Bilgin CCagatay, Fontenay G, Cheng Q, Chang H, Han J, Parvin B.  2016.  BioSig3D: High Content Screening of Three-Dimensional Cell Culture Models. PLoS One. 11(3):e0148379.PDF icon journal.pone_.0148379.PDF (7.98 MB)
Han J, Wang Y, Cai W, Borowsky A, Parvin B, Chang H.  2016.  Integrative Analysis of Cellular Morphometric Context Reveals Clinically Relevant Signatures in Lower Grade Glioma. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2016 - 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings, Part {I}. PDF icon MICCAI16-Final.pdf (1.5 MB)
Han J, Fontenay GV, Wang Y, Mao J-H, Chang H.  2016.  Phenotypic Characterization of Breast Invasive Carcinoma via Transferable Tissue Morphometric Patterns learned from Glioblastoma Multiforme.. Proc IEEE Int Symp Biomed Imaging. 2016:1025-1028.PDF icon isbi16.pdf (2.98 MB)
Cheng Q, Bilgin CCagatay, Fonteney G, Chang H, Henderson M, Han J, Parvin B.  2016.  Stiffness of the microenvironment upregulates ERBB2 expression in 3D cultures of MCF10A within the range of mammographic density.. Sci Rep. 6:28987.PDF icon srep28987.pdf (2.21 MB)
Zhong C, Han J, Borowsky A, Parvin B, Wang Y, Chang H.  2016.  When machine vision meets histology: A comparative evaluation of model architecture for classification of histology sections.. Med Image Anal. 35:530-543.PDF icon MIA-2016.pdf (3.21 MB)
2015
Chang H, Wen Q, Parvin B.  2015.  Coupled segmentation of nuclear and membrane-bound macromolecules through voting and multiphase level set. Pattern Recognition. 48:882–893.PDF icon PR-Chang-2015.pdf (1.38 MB)
Parvin B, Chang H, Han J, Fontenay G.  2015.  Diagnostic and prognostic histopathology system using morphometric indices.
Parvin B., Chang H, Zhou Y..  2015.  Methods for delineating cellular regions and classifying regions of histopathology and microanatomy.
Zhou Y, Chang H, Barner KE, Parvin B.  2015.  Nuclei segmentation via sparsity constrained convolutional regression. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. PDF icon Zhou_ISBI15.pdf (547.11 KB)
Chang H, Spellman PT, Parvin B.  2015.  Predictive sparse morphometric context for classification of histology sections. 12th {IEEE} International Symposium on Biomedical Imaging, {ISBI} 2015, Brooklyn, NY, USA, April 16-19, 2015. PDF icon Chang_ISBI15.pdf (405.4 KB)
Groesser T, Fontenay GV, Han J, Chang H, Pluth J, Parvin B.  2015.  Quantification of the Dynamics of DNA Repair to Ionizing Radiation via Colocalization of 53BP1 and γH2AX. Video Bioinformatics: From Live Imaging to Knowledge.
Chang H, Zhou Y, Borowsky A, Barner KE, Spellman PT, Parvin B.  2015.  Stacked Predictive Sparse Decomposition for Classification of Histology Sections. International Journal of Computer Vision. 113:3–18.
2013
Dumont N, Liu B, DeFilippis RAnna, Chang H, Rabban JT, Karnezis AN, Tjoe JA, Marx J, Parvin B, Tlsty TD.  2013.  Breast fibroblasts modulate early dissemination, tumorigenesis, and metastasis through alteration of extracellular matrix characteristics. Neoplasia. 15(3):249-62.
Chang H, Nayak N, Spellman PT, Parvin B.  2013.  Characterization of Tissue Histopathology via Predictive Sparse Decomposition and Spatial Pyramid Matching. Medical Image Computing and Computer-Assisted Intervention - {MICCAI} 2013 - 16th International Conference, Nagoya, Japan, September 22-26, 2013, Proceedings, Part {II}.
Chang H, Borowsky A, Spellman PT, Parvin B.  2013.  Classification of Tumor Histology via Morphometric Context. 2013 {IEEE} Conference on Computer Vision and Pattern Recognition, Portland, OR, USA, June 23-28, 2013. PDF icon Chang-CVPR2013.pdf (1.96 MB)
Nayak N, Chang H, Borowsky A, Spellman PT, Parvin B.  2013.  Classification of tumor histopathology via sparse feature learning. {ISBI}.
Bilgin CCagatay, Kim S, Leung E, Chang H, Parvin B.  2013.  Integrated profiling of three dimensional cell culture models and 3D microscopy. Bioinformatics. 29:3087–3093.PDF icon Bioinformatics2013.pdf (1.02 MB)
Chang H, Han J, Borowsky A, Loss LA, Gray JW, Spellman PT, Parvin B.  2013.  Invariant Delineation of Nuclear Architecture in Glioblastoma Multiforme for Clinical and Molecular Association. {IEEE} Trans. Med. Imaging. 32:670–682.PDF icon TMI2013.pdf (3.84 MB)
Chang H, Fontenay G, Bilgin CCagatay, Borowsky A, Spellman P, Parvin B.  2013.  Molecular Correlates of Morphometric Subtypes in Glioblastoma Multiforme. Computational Systems Biology: From Molecular Mechanisms to Disease: Second Edition. :423–454.PDF icon Computational Systems Biology 2nd Edition - BookChapter18.pdf (7.87 MB)
Chang H, Zhou Y, Spellman PT, Parvin B.  2013.  Stacked Predictive Sparse Coding for Classification of Distinct Regions in Tumor Histopathology. {IEEE} International Conference on Computer Vision, {ICCV} 2013, Sydney, Australia, December 1-8, 2013.
2012
Loss LA, Bebis G, Chang H, Auer M, Sarkar P, Parvin B.  2012.  Automatic segmentation and quantification of filamentous structures in electron tomography. {ACM} International Conference on Bioinformatics, Computational Biology and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012.
Chang H, Loss LA, Spellman PT, Borowsky A, Parvin B.  2012.  Batch-invariant nuclear segmentation in whole mount histology sections. 9th {IEEE} International Symposium on Biomedical Imaging: From Nano to Macro, {ISBI} 2012, May 2-5, 2012, Barcelona, Spain, Proceedings.
DeFilippis RAnna, Chang H, Dumont N, Rabban JT, Chen Y-Y, Fontenay GV, Berman HK, Gauthier ML, Zhao J, Hu D et al..  2012.  CD36 repression activates a multicellular stromal program shared by high mammographic density and tumor tissues. Cancer Discov. 2(9):826-39.

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